DreEX0076142 @ danRer10
Exon Skipping
Gene
ENSDARG00000021455 | strbp
Description
spermatid perinuclear RNA binding protein [Source:ZFIN;Acc:ZDB-GENE-030729-18]
Coordinates
chr10:9926065-9941099:-
Coord C1 exon
chr10:9940855-9941099
Coord A exon
chr10:9936984-9937173
Coord C2 exon
chr10:9926065-9926209
Length
190 bp
Sequences
Splice sites
3' ss Seq
TATGTGTGTGTGTTTGTCAGTGA
3' ss Score
7.62
5' ss Seq
GAGGTAATG
5' ss Score
8.73
Exon sequences
Seq C1 exon
AGGTCTATTCGGTCATTCGGCAATGATGACCGTCACGTCATGGCCAAACACTCCACCATCTACCCTTCCTCTGAGGACCTGGAGGCAGTGCAGAGCCTCGTCTCCACGGTCGAGTGCGCCCTCAAACATGTGTCTGATTGGATGGATCAATCTCAAGCCAGCCAATCGAATCCAACAAATGCATCAAGCACACAGGAGGAGGAGACAGAGCCCACCGTGGACGAATCGCCAGAAGGCAGCACAAA
Seq A exon
TGAGGAAAGCAGCTGTAGCAGTGGTCCCAGTGAAGGAGGAGTGCTGTGTGGAGTCATGAGGATCGGTCTGGTGGCCAAAGGCCTTCTGATTAAAGATGACATGGACCTGGAGCTGGTGCTCATGTGCCGAGAGAATCCCACCAAGACTTTGCTGAGCACCGTCTGTGAGCACCTCCCACAGCAGATTGAG
Seq C2 exon
AAGCTGACGGAGGAGAAGTATGAGGTACAGCAGTGTATTCCTGAGGCCGCCATCTTAGTCTGCACCACAACAGAACCCAAGCTCACGCTGAAGGTGACGCTCACCTCTCCGCAGTTTAAAGACGACTGTGAGACCGAGGAGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000021455-'11-10,'11-9,12-10
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.701 A=0.180 C2=0.101
Domain overlap (PFAM):
C1:
NO
A:
PF075289=DZF=PU(17.3=67.2)
C2:
PF075289=DZF=FE(19.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGCCAAACACTCCACCATC
R:
GGCCTCAGGAATACACTGCTG
Band lengths:
254-444
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]