MmuEX6100925 @ mm9
Exon Skipping
Gene
ENSMUSG00000026915 | Strbp
Description
spermatid perinuclear RNA binding protein [Source:MGI Symbol;Acc:MGI:104626]
Coordinates
chr2:37490944-37501211:-
Coord C1 exon
chr2:37500991-37501211
Coord A exon
chr2:37496371-37496536
Coord C2 exon
chr2:37490944-37491088
Length
166 bp
Sequences
Splice sites
3' ss Seq
ATATAGGTTTTTATTTGTAGGGA
3' ss Score
5.28
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
Exon sequences
Seq C1 exon
AGATCTATTAGATCTTTTGCCAATGATGATCGCCATGTTATGGTGAAACATTCAACAATCTATCCATCTCCAGAGGAACTTGAAGCTGTGCAAAATATGGTGTCTACTGTTGAATGTGCTCTTAAACATGTCTCAGATTGGCTGGACGAAACAAACAAAGGCACAAAACCTGAGGGGGAAACAGAAGTAAAGAAAGATGAAGCTGTGGAAAACTATTCCAA
Seq A exon
GGATCAAGGTGGCCGGACATTGTGTGGTGTAATGAGGATTGGCTTGGTTGCAAAAGGCTTGCTGATTAAAGATGATATGGACCTGGAGCTAGTCTTAATGTGCAAAGACAAACCCACGGAAACCCTGTTAAATACAGTTAAAGATAACCTTCCTATTCAGATTCAG
Seq C2 exon
AAACTAACAGAAGAGAAATACCAAGTGGAACAATGTATAAATGAAGCATCCATTATAATTCGGAACACGAAAGAGCCAACACTGACTTTGAAGGTGATACTTACTTCCCCTCTAATTAGGGACGAATTGGAGAAGAAGGATGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026915-'10-14,'10-13,12-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.351 A=0.005 C2=0.054
Domain overlap (PFAM):
C1:
NO
A:
PF075289=DZF=PU(17.3=76.8)
C2:
PF075289=DZF=FE(19.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGAGGAACTTGAAGCTGTGCA
R:
ACCTTCAAAGTCAGTGTTGGCT
Band lengths:
246-412
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: