GgaEX1056186 @ galGal4
Exon Skipping
Gene
ENSGALG00000001187 | STRBP
Description
Spermatid perinuclear RNA-binding protein [Source:UniProtKB/Swiss-Prot;Acc:Q5ZIL4]
Coordinates
chr17:8914386-8931775:-
Coord C1 exon
chr17:8931604-8931775
Coord A exon
chr17:8924537-8924702
Coord C2 exon
chr17:8914386-8914483
Length
166 bp
Sequences
Splice sites
3' ss Seq
CAGAATTATTTCATTTCCAGGGA
3' ss Score
6.93
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
GTGAACTACAGAAAGTGACTCTTACAGCATCTTAGCTCTATGAACTCTTGAGCTGTCAAGGGACTGAGAGGCTTATGAAGAGGTTCTGTCAAGCAAAACAGCTCTTATCAAAGACACCAAGGAGGAGGGAAAAGGAGAAAGAAAGAGAGAGTTGAAACAGTAACAAATCATG
Seq A exon
GGATCAAAGTGGTCGGACCTTGTGTGGTGTTATGAGAATTGGCTTGGTTGCAAAGGGTTTGCTGATAAAAGATGATATGGATTTGGAGCTGGTTCTCATGTGCAAAGAAAAACCCACAAAGACCTTACTATGTATAGTCAAAGACAATCTCCCCATTCAAATTCAG
Seq C2 exon
GAGGCCCTGGTCTGCATGACCCCTGTGAACGGGAGCCAACAGATGCTTTGTCTGATATGACAGTTCAGCAAAAAGAAGCCATTACGCACAGTGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001187_MULTIEX1-3/7=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.018 C2=0.576
Domain overlap (PFAM):
C1:
NO
A:
PF075289=DZF=PU(17.3=76.8)
C2:
PF075289=DZF=FE(12.9=100)
Main Skipping Isoform:
ENSGALT00000001802fB132
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGACTCTTACAGCATCTTAGCTCT
R:
GCACTGTGCGTAATGGCTTCT
Band lengths:
252-418
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]