BtaEX0035009 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000021921 | STRBP
Description
Bos taurus spermatid perinuclear RNA binding protein (STRBP), mRNA. [Source:RefSeq mRNA;Acc:NM_001075739]
Coordinates
chr11:94329982-94338650:-
Coord C1 exon
chr11:94338430-94338650
Coord A exon
chr11:94333586-94333751
Coord C2 exon
chr11:94329982-94330126
Length
166 bp
Sequences
Splice sites
3' ss Seq
ATTCAGACTTTTATTTTTAGGGA
3' ss Score
6.06
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
AGATCTATCAGATCTTTTGCCAATGATGATCGCCATGTTATGGTGAAACATTCGACAATTTATCCATCTCCGGAGGAACTTGAAGCTGTTCAGAATATGGTATCTACTGTTGAGTGTGCTCTTAAACATGTCTCAGATTGGCTGGATGAAACAAGTAAAGGCACAAAAGCAGAGGGTGAGACCGAAGTAAAGAAGGAAGAGGCCGTAGACACCTATTCCAA
Seq A exon
GGATCAAGGTGGTCGGACATTGTGTGGTGTAATGAGGATTGGCCTGGTTGCAAAAGGCTTGCTGATTAAAGATGATATGGACTTGGAGCTGGTTTTAATGTGCAAAGACAAACCCACAGAGACCCTGTTAAATACAGTCAAAGATAATCTTCCTATTCAGATTCAG
Seq C2 exon
AAACTCACAGAAGAGAAATATCAAGTGGAACAATGTGTAGATGAGGCATCTATTATAATTCGGAATACAAAAGAACCCACGCTAACTTTGAAGGTGATACTTACTTCCCCTCTAATTAGAGACGAATTGGAGAAGAAGGACGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021921_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.338 A=0.000 C2=0.015
Domain overlap (PFAM):
C1:
NO
A:
PF075289=DZF=PU(17.3=76.8)
C2:
PF075289=DZF=FE(19.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGAGGAACTTGAAGCTGTTCA
R:
CACCTTCAAAGTTAGCGTGGGT
Band lengths:
247-413
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development