MmuEX6100925 @ mm10
Exon Skipping
Gene
ENSMUSG00000026915 | Strbp
Description
spermatid perinuclear RNA binding protein [Source:MGI Symbol;Acc:MGI:104626]
Coordinates
chr2:37635424-37645691:-
Coord C1 exon
chr2:37645471-37645691
Coord A exon
chr2:37640851-37641016
Coord C2 exon
chr2:37635424-37635568
Length
166 bp
Sequences
Splice sites
3' ss Seq
ATATAGGTTTTTATTTGTAGGGA
3' ss Score
5.28
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
Exon sequences
Seq C1 exon
AGATCTATTAGATCTTTTGCCAATGATGATCGCCATGTTATGGTGAAACATTCAACAATCTATCCATCTCCAGAGGAACTTGAAGCTGTGCAAAATATGGTGTCTACTGTTGAATGTGCTCTTAAACATGTCTCAGATTGGCTGGACGAAACAAACAAAGGCACAAAACCTGAGGGGGAAACAGAAGTAAAGAAAGATGAAGCTGTGGAAAACTATTCCAA
Seq A exon
GGATCAAGGTGGCCGGACATTGTGTGGTGTAATGAGGATTGGCTTGGTTGCAAAAGGCTTGCTGATTAAAGATGATATGGACCTGGAGCTAGTCTTAATGTGCAAAGACAAACCCACGGAAACCCTGTTAAATACAGTTAAAGATAACCTTCCTATTCAGATTCAG
Seq C2 exon
AAACTAACAGAAGAGAAATACCAAGTGGAACAATGTATAAATGAAGCATCCATTATAATTCGGAACACGAAAGAGCCAACACTGACTTTGAAGGTGATACTTACTTCCCCTCTAATTAGGGACGAATTGGAGAAGAAGGATGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026915-'13-22,'13-18,16-22=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.351 A=0.002 C2=0.052
Domain overlap (PFAM):
C1:
NO
A:
PF075289=DZF=PU(17.3=76.8)
C2:
PF075289=DZF=FE(19.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGAGGAACTTGAAGCTGTGCA
R:
ACCTTCAAAGTCAGTGTTGGCT
Band lengths:
246-412
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types