DreEX6015502 @ danRer10
Exon Skipping
Gene
ENSDARG00000105177 | ilf3b
Description
interleukin enhancer binding factor 3b [Source:ZFIN;Acc:ZDB-GENE-030131-587]
Coordinates
chr3:13699843-13703739:+
Coord C1 exon
chr3:13699843-13700072
Coord A exon
chr3:13700160-13700340
Coord C2 exon
chr3:13703589-13703739
Length
181 bp
Sequences
Splice sites
3' ss Seq
TGCATCTACTGATATTTCAGTGA
3' ss Score
4.3
5' ss Seq
AAGGTAAGT
5' ss Score
11
Exon sequences
Seq C1 exon
CCTCCTCCTCTTCGTCATCGCTCCATGCGCATCTTTGTGAACGACGACCGCCATGTGATGGCCAAACACTCGGCCATCTATCCCACCCAGGAGGAGCTGGAGGGGGTGCAGAACATGGTGTCCCACACAGAGCGTGCTCTCAAGCTTGTGTCTGATTGGCTGGATGACCAGGAGAAGGGAAATGCCAAAGTAAATGCATTGGACACAGATGGAGAAGGGGATAAGGAGAC
Seq A exon
TGAGCCAAGCACCGGGGAGCAGGCAACCCGTTCCCTGCGCGGAGTCATGCGTGTGGGGCTGGTAGCTAAAGGCCTTCTCCTGAAGGGAGATCTCGACCTGGAGCTTGTGCTGCTGTGCAAAGAGAAACCCACTATCACCCTGCTAAAGAAAGTGTCTGATAACCTGGCTGTGCAGCTAAAG
Seq C2 exon
CAGCTCGTCACTGAGGAAAAATATGATGTTAAACCGTGCATCCGCGATGCCACCATTGTCATCAAAAATGCCAAAGAGCCTCCGCTGACCCTCACCATTCACCTGACTTCACCACTCGTGAGGGAGGAGGTTGAGAAGCAGGCTGCTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000105177-'2-8,'2-6,5-8=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.506 A=0.183 C2=0.118
Domain overlap (PFAM):
C1:
NO
A:
PF075289=DZF=PU(34.7=70.5)
C2:
PF075289=DZF=FE(83.3=100),PF075289=DZF=PU(5.1=5.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCATGCGCATCTTTGTGAACG
R:
GCGGATGCACGGTTTAACATC
Band lengths:
253-434
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]