MmuEX0024061 @ mm10
Exon Skipping
Gene
ENSMUSG00000032178 | Ilf3
Description
interleukin enhancer binding factor 3 [Source:MGI Symbol;Acc:MGI:1339973]
Coordinates
chr9:21388524-21392442:+
Coord C1 exon
chr9:21388524-21388753
Coord A exon
chr9:21389306-21389483
Coord C2 exon
chr9:21392295-21392442
Length
178 bp
Sequences
Splice sites
3' ss Seq
GACTTTTGTCTGTCTCTCAGGGA
3' ss Score
9.79
5' ss Seq
ACTGTGAGT
5' ss Score
7.94
Exon sequences
Seq C1 exon
CGTCCCATGAGAATTTTTGTGAATGATGATCGCCACGTGATGGCAAAGCATTCTTCAGTGTACCCAACACAAGAGGAGCTGGAGGCTGTACAGAACATGGTGTCCCATACTGAGCGGGCCCTGAAGGCTGTCTCTGACTGGATTGATGAGCAGGAGAAAGGCAACAGCGAGCTCTCTGAGGCAGAAAATATGGACACACCCCCAGACGATGAGAGCAAAGAAGGGGCTGG
Seq A exon
GGAACAGAAGGCGGAACACATGACTAGGACCCTGAGGGGCGTGATGCGGGTCGGCCTGGTAGCCAAGGGTCTTCTGCTCAAGGGGGACTTGGATCTGGAGCTGGTTCTGCTCTGTAAGGAGAAGCCCACAACCGCCCTTCTGGACAAGGTGGCTGACAACCTGGCCATCCAGCTCACT
Seq C2 exon
ACTGTAACAGAAGACAAGTATGAAATACTCCAGTCTGTGGATGATGCTGCGATTGTGATAAAAAACACAAAAGAGCCCCCCTTGTCCTTGACCATCCATCTGACCTCCCCTGTTGTCAGAGAAGAAATGGAGAAAGTATTAGCTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032178_MULTIEX1-4/9=3-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.672 A=0.150 C2=0.010
Domain overlap (PFAM):
C1:
NO
A:
PF075289=DZF=PU(17.3=71.7)
C2:
PF075289=DZF=PD(35.7=92.6)
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCACGTGATGGCAAAGCATTC
R:
ATCGCAGCATCATCCACAGAC
Band lengths:
251-429
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types