BtaEX6038353 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000011356 | CAMSAP3
Description
calmodulin regulated spectrin-associated protein family, member 3 [Source:HGNC Symbol;Acc:HGNC:29307]
Coordinates
chr7:17686362-17687596:+
Coord C1 exon
chr7:17686362-17686669
Coord A exon
chr7:17686995-17687094
Coord C2 exon
chr7:17687484-17687596
Length
100 bp
Sequences
Splice sites
3' ss Seq
CTGACACCCTCTGCTCCCAGGCT
3' ss Score
8.25
5' ss Seq
TCGGTGAGT
5' ss Score
11.11
Exon sequences
Seq C1 exon
GCTGGTCCAGGAGGAGGTGACCCCCAGCCCCCCTGCACCCACAGCTCCTACGGCCTCTGCTGCAATCCCAGCCCCAGCTGCCCGGGCCCCTGCTGAGGAGGAGGTGGGCCCCCGGCGGGGGGAGTTCACACGGCTGGAGTATGAACGCCGGGCCCAGCTGAAGCTGATGGACGATCTTGATAAGGTGCTGCGGCCCCGGGCAGCAGGGAGTGGGGGGCCGGGCCGCGGCGGTCGGAGGGCCCCTCGGCCACGCTCTGGTTGCTGTGATGACTCGGCCCTGGCTCGGAGCCCAGCCCGTGGACTGCTGG
Seq A exon
GCTCTCGGCTCAGCAAAATCTACTCCCAGTCCACCCTGTCTCTGTCCACGGTGGCCAACGAGGGCCCCAGTAACCTTGGTGTGAAGAGGCCCACGTCTCG
Seq C2 exon
GGCTCCATCTCCATCTGGCCTCATGTCCCCAAGCCGCCTGCCCGGCAGCCGCGAACGTGAGTGGGACAATGGCAGCAACGCATCTTCCCCGGCCTCAGTGCCTGAGTATACGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011356-'15-24,'15-22,16-24=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.923 A=0.735 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF086836=CAMSAP_CKK=PU(0.8=2.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACACGGCTGGAGTATGAACG
R:
CCATTGTCCCACTCACGTTCG
Band lengths:
254-354
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]