HsaEX6092463 @ hg19
Exon Skipping
Gene
ENSG00000076826 | KIAA1543
Description
calmodulin regulated spectrin-associated protein family, member 3 [Source:HGNC Symbol;Acc:29307]
Coordinates
chr19:7680304-7682324:+
Coord C1 exon
chr19:7680304-7680605
Coord A exon
chr19:7681409-7681508
Coord C2 exon
chr19:7682212-7682324
Length
100 bp
Sequences
Splice sites
3' ss Seq
CCTGCAATCTCTGTCCCCAGGCT
3' ss Score
10.07
5' ss Seq
TCGGTGAGT
5' ss Score
11.11
Exon sequences
Seq C1 exon
GCTGGCCCAAGAGGAGGCCCCGGGCCCAGCCCCGCTTGTGTCCGCAGTCCCGATGGCGACTCCAGCCCCTGCTGCCCGGGCTCCAGCCGAGGAGGAGGTGGGCCCCCGGAAGGGGGACTTCACGCGGCAGGAGTACGAGCGCCGGGCCCAGCTGAAGCTGATGGACGACCTCGATAAGGTGCTGCGGCCCCGGGCTGCGGGGTCCGGGGGTCCAGGTCGGGGCGGGCGGAGGGCCACCCGGCCTCGCTCGGGTTGCTGTGACGACTCAGCCCTGGCACGAAGCCCAGCCCGCGGCCTGCTGG
Seq A exon
GCTCTCGGCTGAGCAAAATCTATTCCCAGTCCACCCTGTCACTGTCCACTGTGGCCAACGAGGCCCACAATAACCTCGGGGTGAAGAGGCCCACGTCTCG
Seq C2 exon
GGCTCCCTCCCCGTCAGGTCTCATGTCCCCAAGCCGCCTGCCTGGAAGCCGCGAACGGGACTGGGAAAATGGCAGCAATGCCTCCTCCCCAGCGTCAGTGCCCGAGTACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000076826-'14-15,'14-14,15-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.941 A=0.559 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF086836=CAMSAP_CKK=PU(0.8=2.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCACGCGGCAGGAGTAC
R:
CCATTTTCCCAGTCCCGTTCG
Band lengths:
257-357
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)