MmuEX6034118 @ mm10
Exon Skipping
Gene
ENSMUSG00000044433 | Camsap3
Description
calmodulin regulated spectrin-associated protein family, member 3 [Source:MGI Symbol;Acc:MGI:1916947]
Coordinates
chr8:3606504-3608301:+
Coord C1 exon
chr8:3606504-3606820
Coord A exon
chr8:3607791-3607890
Coord C2 exon
chr8:3608189-3608301
Length
100 bp
Sequences
Splice sites
3' ss Seq
ACTGGTACTGTCTATCCTAGGTT
3' ss Score
8.71
5' ss Seq
TCGGTGAGT
5' ss Score
11.11
Exon sequences
Seq C1 exon
GCTGGCTCAGGAGGCTCCAGGCTTGGCCTTTACAACTCCTGTTGTAGCCTCTGCGGCTCCAGTGGCCACCTTGGCTCCTACTACCAGAGCCATGGCCCCAGCTGAGGAGGAGGTGGGCCCCCGGCGGGGGGACTTCACAAGACTTGAGTATGAACGCCGGGCACAACTGAAACTGATGGATGACCTTGATAAGGTGCTACGGCCCCGGGCCTCAGGGACCGGGGGACCAGGGCGGGGCGGGCGCAGGGCCACCCGGCCACGCTCTGGTTGCTGTGATGACTCGGCCTTGGCACGAAGCCCAGCCCGCGGCCTGCTGG
Seq A exon
GTTCACGGCTCAGCAAGGTCTATTCCCAGTCCACGCTGTCCCTATCTACGGTGGCCAACGAGGCTCCCAATAACCTTGGTGTGAAGAGGCCCACCTCTCG
Seq C2 exon
GGCCCCTTCTCCATCAGGCCTCATGTCTCCAAGCCGCCTGCCTGGCAGTCGAGAACGTGACTGGGAGAATGGAAGCAATGCATCCTCCCCAGCATCAGTGCCTGAGTACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000044433-'15-28,'15-25,23-28=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.879 A=0.780 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF086836=CAMSAP_CKK=PU(0.8=2.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACTTGAGTATGAACGCCGGG
R:
GCTTCCATTCTCCCAGTCACG
Band lengths:
253-353
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types