RnoEX6063134 @ rn6
Exon Skipping
Gene
ENSRNOG00000000986 | Camsap3
Description
calmodulin regulated spectrin-associated protein family, member 3 [Source:RGD Symbol;Acc:1597412]
Coordinates
chr12:2154776-2156577:+
Coord C1 exon
chr12:2154776-2155092
Coord A exon
chr12:2156060-2156159
Coord C2 exon
chr12:2156465-2156577
Length
100 bp
Sequences
Splice sites
3' ss Seq
CTGGTACTGTCTCTTTCTAGGCT
3' ss Score
10.84
5' ss Seq
TCGGTAAGC
5' ss Score
9.86
Exon sequences
Seq C1 exon
GCTGGCTCAGGAGGAGGCTCCGGGCTTGGCCCTTTCAGCTCCCGTAGCCCCTGCTGCTCCGGTGGCCACCTTGGCTCCTGCTACCCGAGCCATGGCCCCAGCTGAGGAAGAGGTGGGCCCCCGACGTGGGGACTTCACAAGACTTGAGTATGAGCGTCGGGCACAACTGAAGCTGATGGATGACCTTGATAAGGTGCTACGGCCCCGGGCCTCAGGGACCGGGGGACCAGGGCGGGGCGGGCGCAGGGCCACCCGGCCACGCTCTGGTTGCTGTGATGACTCGGCCTTGGCACGAAGCCCAGCCCGCGGCCTGCTGG
Seq A exon
GCTCCCGGCTCAGCAAGGTCTATTCCCAGTCCACACTGTCTCTGTCTACTGTGGCCAATGAGGCTCCCAATAACCTTGGTGTGAAGAGGTCCACGTCTCG
Seq C2 exon
GGCCCCTTCTCCATCAGGCCTCATGTCGCCCAGCCGCCTGCCTGGCAGTCGAGAACGTGACTGGGAGAATGGGAGCAATGCTTCCTCCCCAGCATCAGTGCCTGAGTACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000986-'19-24,'19-23,20-24=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.879 A=0.735 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF086836=CAMSAP_CKK=PU(0.8=2.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACTTGAGTATGAGCGTCGGG
R:
TCCCATTCTCCCAGTCACGTT
Band lengths:
251-351
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]