BtaEX6038362 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000011356 | CAMSAP3
Description
calmodulin regulated spectrin-associated protein family, member 3 [Source:HGNC Symbol;Acc:HGNC:29307]
Coordinates
chr7:17678881-17679838:+
Coord C1 exon
chr7:17678881-17679134
Coord A exon
chr7:17679512-17679634
Coord C2 exon
chr7:17679743-17679838
Length
123 bp
Sequences
Splice sites
3' ss Seq
TTCAGCCCTTGCCCCTACAGGGA
3' ss Score
10.17
5' ss Seq
ACGGTAGGT
5' ss Score
10.15
Exon sequences
Seq C1 exon
AGCATGTGCCCTCGGAGCTGTGGGAGCCCTTCTACACGGATCAGTACGCCCAGGAGCATGTGAAGCCCCCGGTGACACGGCTGCTGTTCTCGGCCGAGCTGTACTGCCGGGCCTGGCGCCAGGCGCTGCCGCAGCTCGAAGCACCCCCTAGCCCCTCTGCGCTTCTGGCATTGCTGGCACGGAGGGGCACAGTGCCTGCGCTGCCCGAGCGCCCGGTGCAGGAGGCCGACCTGAGGCACCAGCCTATCCTCATG
Seq A exon
GGAGCCCATCTAGCTGTCATTGATGCCCTCATGGTTGCCTTCGCCTTCGAGTGGACAAAGACACTGCCTGGTCCCTTGGCCCTAGCCAGCTTGGAGCACAAGCTCCTTTTCTGGGTAGACACG
Seq C2 exon
ACCATCCGGCGGCTGCAGGAGAAGACGGAGCAGGAAGCTGCCCAGAGAGCTACTCCAGCGGCCCCTGCAGATGGGGTGGCCCCAGCGCAGCCTTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011356-'1-6,'1-5,2-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.043 A=0.000 C2=0.573
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACACGGATCAGTACGCCCAG
R:
TTCCTGCTCCGTCTTCTCCTG
Band lengths:
258-381
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]