Special

MmuEX0000954 @ mm10

Exon Skipping

Gene
ENSMUSG00000044433 | Camsap3
Description
calmodulin regulated spectrin-associated protein family, member 3 [Source:MGI Symbol;Acc:MGI:1916947]
Coordinates
chr8:3597842-3600814:+
Coord C1 exon
chr8:3597842-3598095
Coord A exon
chr8:3598686-3598808
Coord C2 exon
chr8:3600676-3600814
Length
123 bp
Sequences
Splice sites
3' ss Seq
TCCAGCCTTTGCCCCAACAGGGA
3' ss Score
8.54
5' ss Seq
ACAGTAAGT
5' ss Score
9.49
Exon sequences
Seq C1 exon
AGCATGTGCCTCCGGAGCTGTGGGAACCCTTCTACACCGATCAGTACGCACAGGAGCACGTGAAGCCCCCAGTGACGCGGCTGCTGCTCTCTGCGGAACTATACTGTCGGGCCTGGCGCCAGGCACTGCCACAGCTCGAGCCATCCCCCAGTCCCTCTGCTCTGTTGGCCTTGCTGGCGAGGAGGGGCACGGTGCCTTCACTGCCTGAGCACCCAGTGCGCGAGGCTGACCTGAAACACCAGCCAATTCTCATG
Seq A exon
GGAGCCCACCTAGCTGTCATCGATGCTCTCATGGTTGCCTTCTCATTTGAGTGGACAAAGACACTACCTGGTCCCTTGGCTCTGAGCAGCTTGGAGCACAAACTCCTTTTCTGGGTAGACACA
Seq C2 exon
ATTCGATATCGCAAGGACCGTGCCATTGCCCGAAGGGCTCCCTGCTTTCCAAATGTGACTACCCTTCAGGACCTGGCCAGTGGGGCAGCACTGGCTGCCACCATCCACTGCTATTGTCCCCAGCTATTACGACTTGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000044433_MULTIEX1-2/5=1-C2
Average complexity
C2*
Mappability confidence:
100%=100=100%
Protein Impact





	

	
Alternative protein isoforms (Ref)





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=0.047 A=0.000 C2=0.000
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
NO

							
A:
NO

							
C2:
PF119713=CAMSAP_CH=PU(48.2=85.1)

						

					

				








    
Main Inclusion Isoform:
ENSMUSP00000146896





     
                   









    
Main Skipping Isoform:
NA





     
      









    
Other Inclusion Isoforms:
ENSMUSP00000058958, ENSMUSP00000125993, ENSMUSP00000146359, ENSMUSP00000146565, ENSMUSP00000146772, ENSMUSP00000146852, ENSMUSP00000147209, ENSMUSP00000147231
          









    
Other Skipping Isoforms:
NA
  



Associated events






Other assemblies


mm9




Conservation


Human
(hg38)
chr19:7606271-7606393 
HIGH PSI
HsaEX6092472
(CAMSAP3)
Human
(hg19)
chr19:7671157-7671279 
HIGH PSI
HsaEX6092472
(KIAA1543)
Rat
(rn6)
chr12:2145281-2145403 
HIGH PSI
RnoEX0016558
(Camsap3)
Cow
(bosTau6)
chr7:17679512-17679634 
HIGH PSI
BtaEX6038362
(CAMSAP3)
Chicken
(galGal4)
chr17:8192683-8192844 
HIGH PSI
GgaEX1012719
(CAMSAP1)
Chicken
(galGal4)
chr8:1397026-1397187 
HIGH PSI
GgaEX6043441
(CAMSAP2)
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
chr3:53167527-53167667 
HIGH PSI
DreEX0002294
(CAMSAP3 (1 of 2))
Fruitfly
(dm6)
chr2R:17531518-17531653 
HIGH PSI
DmeEX6011627
(Patronin)




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
GATCAGTACGCACAGGAGCAC

				
R: 
ATGGCACGGTCCTTGCGATAT

				
Band lengths: 
242-365

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Pre-implantation embryo development
  • Ribosome-engaged transcriptomes of neuronal types
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types





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