RnoEX0016558 @ rn6
Exon Skipping
Gene
ENSRNOG00000000986 | Camsap3
Description
calmodulin regulated spectrin-associated protein family, member 3 [Source:RGD Symbol;Acc:1597412]
Coordinates
chr12:2134022-2148435:+
Coord C1 exon
chr12:2134022-2134282
Coord A exon
chr12:2145281-2145403
Coord C2 exon
chr12:2148297-2148435
Length
123 bp
Sequences
Splice sites
3' ss Seq
TCCAGCATTTGCCCCAACAGGGA
3' ss Score
7.08
5' ss Seq
ACAGTAAGT
5' ss Score
9.49
Exon sequences
Seq C1 exon
CGGCCGCGGCGGCAACCCGGATCGTGGTGGCGGAGGCTCTGCAGCCGCGCAGCGCAGCGCAGCCCAGCCCATCAGAGCGCGCGGACCCAGGCGGCCGTAGCCCCGGCGTCGCCATGGTGGAAGCGGCGCCCGCGGGGTCCGGGCCACTGCGGAGGACTTTCTTGGTCCCCGAGATCAAGTCATTGGACCAGTACGATTTCTCTAGAGCCAAGGCGGCGGCGAGTCTGGCGTGGGTGCTGCGGGCCGCATTCGGGGGAGCAG
Seq A exon
GGAGCCCACCTAGCTGTCATCGATGCGCTCATGGTTGCCTTCTCATTTGAGTGGACAAAGACCCTGCCTGGTCCCTTGGCTCTGAGCAGTTTGGAGCACAAACTCCTTTTCTGGGTAGACACA
Seq C2 exon
ATTCGATACCGCAAGGACCGTGCCATTGCCCGGAGGGCCCCCTGCTTTCCAAATGTGACTACCCTTCAGGACCTGGCCAGTGGAGCAGCACTGGCTGCCACCATCCACTGCTATTGTCCCCAGCTATTACGACTTGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000986_MULTIEX1-2/5=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.020 A=0.000 C2=0.005
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF119713=CAMSAP_CH=PU(48.2=85.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCACTGCGGAGGACTTTCTTG
R:
GCTGGGGACAATAGCAGTGGA
Band lengths:
242-365
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]