DreEX0002294 @ danRer10
Exon Skipping
Gene
ENSDARG00000059475 | CAMSAP3 (1 of 2)
Description
calmodulin regulated spectrin-associated protein family, member 3 [Source:HGNC Symbol;Acc:HGNC:29307]
Coordinates
chr3:53143301-53171308:+
Coord C1 exon
chr3:53143301-53143566
Coord A exon
chr3:53167527-53167667
Coord C2 exon
chr3:53171225-53171308
Length
141 bp
Sequences
Splice sites
3' ss Seq
GTTTCCTCTCATTGGTACAGAGT
3' ss Score
6.03
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
Exon sequences
Seq C1 exon
AGAATGTCCCGGTGGAGCTGCGAGACCCGTTCTATTGTGATCAGTATGAGCAAGAGCACCTGAAGCCCCCTGTTACGCGTCTGCTGCTGTCTCCTGAACTCTACTGTCGCACTTATGGTCTTCTGCTGGGTGGGAGCCCGGGGGCCGAGGGGCCGCCCAAAGACATCCCAGCACTCTTACAGCTCCTGGGCCGAAAGGGCTTGGCACCCAAAGACCAGAATGTACCAGTGACAGAGTCAGAGCTCCGACAGAAGCCCATCAAAATG
Seq A exon
AGTGCCCACTTGGAGTTGATAGATGCCTTAATGGCAGTGGGTGCCATGGAGACGGTGAGCACAGTCTTGGCGAGGAGCGGATCGGAGTTATTGGGTACAGATACGACATGGGACAGAGCCCTGCTTTGCTGGGTGAAGATG
Seq C2 exon
CTGAATCAAAAATTGAAGGAACAAACTGAAGGTACACAAATCGACACATCTCAGTCTGCTGAACCACAGCCTGTTCAACCCTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000059475_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.124 A=0.000 C2=0.661
Domain overlap (PFAM):
C1:
NO
A:
PF0030726=CH=PU(6.2=19.1)
C2:
PF0030726=CH=FE(18.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCGCACTTATGGTCTTCTGC
R:
GGTTGAACAGGCTGTGGTTCA
Band lengths:
242-383
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]