HsaEX6092472 @ hg19
Exon Skipping
Gene
ENSG00000076826 | KIAA1543
Description
calmodulin regulated spectrin-associated protein family, member 3 [Source:HGNC Symbol;Acc:29307]
Coordinates
chr19:7670112-7671457:+
Coord C1 exon
chr19:7670112-7670365
Coord A exon
chr19:7671157-7671279
Coord C2 exon
chr19:7671362-7671457
Length
123 bp
Sequences
Splice sites
3' ss Seq
TCTAGCGCTTGCCCCCACAGGGA
3' ss Score
9.39
5' ss Seq
ACGGTAGGT
5' ss Score
10.15
Exon sequences
Seq C1 exon
AGCACGTGCCCCCGGAGCTGTGGGAGCCCTTCTATACCGACCAGTACGCGCAGGAGCATGTGAAGCCCCCGGTGACACGGCTGCTGCTCTCAGCCGAGCTCTACTGCAGAGCCTGGCGCCAGGCACTGCCACAGCTTGAAACACCCCCCAACCCCTCTGCACTGCTGGCCCTGCTGGCGCGGAGGGGCACAGTGCCTGCTTTGCCCGAGCGCCCGGTGCGCGAGGCCGACCTGAGGCACCAGCCCATTCTCATG
Seq A exon
GGAGCCCACCTAGCTGTCATTGATGCCCTCATGGCTGCCTTTGCCTTCGAGTGGACAAAGACCCTGCCAGGTCCCTTGGCCCTGACCAGCTTGGAGCACAAGCTGCTTTTCTGGGTGGACACG
Seq C2 exon
ACCGTCCGGCGGCTGCAGGAGAAGACCGAGCAGGAAGCGGCCCAGCGAGCCTCTCCAGCAGCCCCTGCAGACGGGGCGGCCCCGGCGCAGCCCTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000076826-'1-2,'1-1,2-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.041 A=0.000 C2=0.625
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATACCGACCAGTACGCGCAG
R:
TTCCTGCTCGGTCTTCTCCTG
Band lengths:
258-381
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)