BtaEX6038662 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000017280 | C3
Description
Bos taurus complement component 3 (C3), mRNA. [Source:RefSeq mRNA;Acc:NM_001040469]
Coordinates
chr7:19018631-19020467:+
Coord C1 exon
chr7:19018631-19018794
Coord A exon
chr7:19020102-19020260
Coord C2 exon
chr7:19020408-19020467
Length
159 bp
Sequences
Splice sites
3' ss Seq
TCCTCTGTCATGGGTAACAGGCC
3' ss Score
5.89
5' ss Seq
GAGGTAAAG
5' ss Score
8.27
Exon sequences
Seq C1 exon
AAAAGAACCGCTGGGAGGAACCCAACCAGAAGCTCTACAATGTGGAGGCCACGTCCTACGCCCTCTTGGCTCTGCTGGCACGCAAAGACTACGACACTACGCCTCCTGTCGTGCGCTGGCTCAACGAGCAGAGATACTATGGAGGTGGTTATGGCTCCACGCAG
Seq A exon
GCCACTTTCATGGTGTTCCAAGCCTTGGCCCAATACCAGAAGGATGTTCCTGATCACAAGGAGCTGAACCTGGATGTGTCCATCCAACTGCCCAGCCGCAACTCTGCGGTCAGGCATCGTATCCTCTGGGAATCTGCCAGCCTCCTGCGCTCAGAAGAG
Seq C2 exon
ACTAAGGAAAATGAGCGTTTCACAGTAAAAGCTGAAGGGAAAGGACAAGGCACCTTGTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017280-'40-44,'40-43,42-44=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.036 A=0.000 C2=0.250
Domain overlap (PFAM):
C1:
PF076789=A2M_comp=FE(23.1=100)
A:
PF076789=A2M_comp=PD(5.6=24.5)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAAGAACCGCTGGGAGGAAC
R:
GGTGCCTTGTCCTTTCCCTTC
Band lengths:
218-377
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]