DreEX6034046 @ danRer10
Exon Skipping
Gene
ENSDARG00000093198 | C3 (8 of 8)
Description
complement component 3 [Source:HGNC Symbol;Acc:HGNC:1318]
Coordinates
chr1:55328996-55332119:-
Coord C1 exon
chr1:55331956-55332119
Coord A exon
chr1:55330312-55330467
Coord C2 exon
chr1:55328996-55329055
Length
156 bp
Sequences
Splice sites
3' ss Seq
TGTCTCTATCTTCATCTCAGGCC
3' ss Score
8.44
5' ss Seq
AAGGTGCGT
5' ss Score
9.49
Exon sequences
Seq C1 exon
ACAAAAGCCACTGGCCTGTTCCTGGAAGCAGCAGCTTTACTCTGGAGGCTTCGTCTTATGCGCTTCTGGCTCTTGTTAAATTGCATGACTACCAGAACACAGCTCCTATTGTAAACTGGCTCAACAACCAGAGGCAGTACAACGGAGGATACGGCACCACTCAG
Seq A exon
GCCACCATCATGGTGTTCCAGGCGGTCGCTGAGTACAGGATTCATGCCAAAAACATAAAGCAGCTGGACCTGGAGCTGTCCATCCGTGTGGAAGGTGTTCGGCCCACTGTGTTTACCTTCAGCAAAAACAACGATCACCTCTCACAAACAGCGAAG
Seq C2 exon
ATTCCCTCTAACAAAGGAATCACCATCAGTGCTAAGGGTTTTGGTGAAGCTTCTGTAACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000093198-'29-32,'29-31,31-32=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF076789=A2M_comp=FE(23.4=100)
A:
PF076789=A2M_comp=PD(5.6=25.0)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCACTGGCCTGTTCCTG
R:
AGTTACAGAAGCTTCACCAAAACC
Band lengths:
218-374
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]