RnoEX0015700 @ rn6
Exon Skipping
Gene
ENSRNOG00000046834 | C3
Description
complement C3 [Source:RGD Symbol;Acc:2232]
Coordinates
chr9:9738906-9740874:+
Coord C1 exon
chr9:9738906-9739069
Coord A exon
chr9:9740172-9740330
Coord C2 exon
chr9:9740815-9740874
Length
159 bp
Sequences
Splice sites
3' ss Seq
TCCTATTCCACGGGTTCTAGGCT
3' ss Score
4.64
5' ss Seq
GAGGTATAG
5' ss Score
7.13
Exon sequences
Seq C1 exon
ATCGGAACCGCTGGGAGGAGCCTGGCCAGCAGCTCTACAATGTGGAGGCCACCTCCTACGCCCTCCTGGCCCTGCTGCTGCTGAAAGACTTTGACTCTGTGCCTCCTGTGGTGCGCTGGCTCAACGAGCAAAGATACTACGGAGGTGGCTATGGCTCCACGCAG
Seq A exon
GCTACCTTCATGGTATTCCAAGCCTTGGCTCAATACCAAACAGATGTCCCTGACCACAAGGACTTGAACATGGATGTGTCCCTCCACCTCCCCAGCCGCAGCTCCCCAACTGTGTTTCGCCTGCTATGGGAAAGTGGCAGTCTCCTGAGATCAGAAGAG
Seq C2 exon
ACCAAGCAGAATGAGGGCTTTTCTCTGACAGCCAAAGGAAAAGGCCAAGGCACACTGTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000046834-'41-52,'41-51,43-52
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.018 A=0.019 C2=0.250
Domain overlap (PFAM):
C1:
PF076789=A2M_comp=FE(23.1=100)
A:
PF076789=A2M_comp=PD(5.6=24.5)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCGGAACCGCTGGGAGG
R:
TGTGCCTTGGCCTTTTCCTTT
Band lengths:
218-377
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]