MmuEX6078741 @ mm9
Exon Skipping
Gene
ENSMUSG00000024164 | C3
Description
complement component 3 [Source:MGI Symbol;Acc:MGI:88227]
Coordinates
chr17:57349012-57351158:-
Coord C1 exon
chr17:57350995-57351158
Coord A exon
chr17:57349588-57349746
Coord C2 exon
chr17:57349012-57349071
Length
159 bp
Sequences
Splice sites
3' ss Seq
TCCTATTCCACCGGTTCTAGGCT
3' ss Score
6.54
5' ss Seq
GAGGTACAG
5' ss Score
6.62
Exon sequences
Seq C1 exon
ATCGGAACCGCTGGGAGGAGCCTGACCAGCAGCTCTACAACGTAGAGGCCACATCCTACGCCCTCCTGGCCCTGCTGCTGCTGAAAGACTTTGACTCTGTGCCCCCTGTAGTGCGCTGGCTCAATGAGCAAAGATACTACGGAGGCGGCTATGGCTCCACCCAG
Seq A exon
GCTACCTTCATGGTATTCCAAGCCTTGGCCCAATATCAAACAGATGTCCCTGACCATAAGGACTTGAACATGGATGTGTCCTTCCACCTCCCCAGCCGTAGCTCTGCAACCACGTTTCGCCTGCTCTGGGAAAATGGCAACCTCCTGCGATCGGAAGAG
Seq C2 exon
ACCAAGCAAAATGAGGCCTTCTCTCTAACAGCCAAAGGAAAAGGCCGAGGCACATTGTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024164-'31-30,'31-29,32-30=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.055 A=0.000 C2=0.100
Domain overlap (PFAM):
C1:
PF076789=A2M_comp=FE(23.1=100)
A:
PF076789=A2M_comp=PD(5.6=24.5)
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCGGAACCGCTGGGAGG
R:
ACAATGTGCCTCGGCCTTTTC
Band lengths:
222-381
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: