BtaEX6038928 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000031658 | SEMA6B
Description
sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6B [Source:HGNC Symbol;Acc:HGNC:10739]
Coordinates
chr7:20792250-20793803:+
Coord C1 exon
chr7:20792250-20792340
Coord A exon
chr7:20793106-20793225
Coord C2 exon
chr7:20793715-20793803
Length
120 bp
Sequences
Splice sites
3' ss Seq
CCCGATTCACACCCACCCAGAAG
3' ss Score
2.48
5' ss Seq
AAGGTGGGG
5' ss Score
5.87
Exon sequences
Seq C1 exon
ATGGACACACTGCAGCCCCTCCGGGACAACATCAGCGGCATGGCCCGCTGCCCATATGACCCCAAACACGCCAACGTTGCCCTCTTCTCTG
Seq A exon
AAGGGATGCTCTTCACAGCCACCGTTACCGACTTCCTCGCCATCGATGCCGTCATCTACCGCAGTCTCGGGGACCGGCCCACTCTGCGCACGGTGAAACACGACTCCAAGTGGTTCAAAG
Seq C2 exon
AGCCATACTTTGTCCACGCGGTGGAGTGGGGCAGCCACATCTATTTCTTCTTCCGGGAGATCGCAATGGAGTTTAACTACCTGGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000031658-'7-11,'7-9,8-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(7.1=100)
A:
PF0140314=Sema=FE(9.5=100)
C2:
PF0140314=Sema=FE(6.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGACACACTGCAGCCCC
R:
TCTCCAGGTAGTTAAACTCCATTGC
Band lengths:
178-298
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]