GgaEX6027917 @ galGal4
Exon Skipping
Gene
ENSGALG00000001171 | SEMA6B
Description
sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6B [Source:HGNC Symbol;Acc:HGNC:10739]
Coordinates
chr28:2500532-2501023:-
Coord C1 exon
chr28:2500933-2501023
Coord A exon
chr28:2500709-2500828
Coord C2 exon
chr28:2500532-2500620
Length
120 bp
Sequences
Splice sites
3' ss Seq
TGCTTGTGTCTCCTGTGCAGGGG
3' ss Score
9.5
5' ss Seq
AAGGTGCTT
5' ss Score
4.72
Exon sequences
Seq C1 exon
ATGGACACACTGGAGCCCATTGGGGACAACATCAGCGGCATGGCACGGTGTCCCTACGACCCCAAGCACGCCAATGTGGCGCTGTTCACAG
Seq A exon
GGGGGATGCTCTTCACAGCCACGGTGACAGATTTCCTGGCCATCGACGCCGTCATCTACCGCAGCCTGGGGGACAGCCCGACCCTGCGCACTGTTAAACACGACTCCAAGTGGTTCAAAG
Seq C2 exon
AGCCCTACTTTGTGCACGCGGTGGAGTGGAGGAGCCACGTCTACTTCTTCTTCCGGGAGATCGCCATGGAGTTCAACTACCTGGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001171-'8-10,'8-9,9-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(7.1=100)
A:
PF0140314=Sema=FE(9.4=100)
C2:
PF0140314=Sema=FE(6.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGACACACTGGAGCCCATT
R:
TCTCCAGGTAGTTGAACTCCA
Band lengths:
178-298
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]