HsaEX6092046 @ hg38
Exon Skipping
Gene
ENSG00000167680 | SEMA6B
Description
semaphorin 6B [Source:HGNC Symbol;Acc:HGNC:10739]
Coordinates
chr19:4554388-4555564:-
Coord C1 exon
chr19:4555474-4555564
Coord A exon
chr19:4554976-4555095
Coord C2 exon
chr19:4554388-4554476
Length
120 bp
Sequences
Splice sites
3' ss Seq
TCCCCACCCACCCCATCCAGACG
3' ss Score
6.29
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
Exon sequences
Seq C1 exon
ATAGACACCCTGCAGCCCGTCGGAGACAACATCAGCGGTATGGCCCGCTGCCCGTACGACCCCAAGCACGCCAATGTTGCCCTCTTCTCTG
Seq A exon
ACGGGATGCTCTTCACAGCTACTGTTACCGACTTCCTAGCCATTGATGCTGTCATCTACCGCAGCCTCGGGGACAGGCCCACCCTGCGCACCGTGAAACATGACTCCAAGTGGTTCAAAG
Seq C2 exon
AGCCTTACTTTGTCCATGCGGTGGAGTGGGGCAGCCATGTCTACTTCTTCTTCCGGGAGATTGCGATGGAGTTTAACTACCTGGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000167680-'8-20,'8-16,9-20=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(15.2=100)
A:
PF0140314=Sema=FE(20.2=100)
C2:
PF0140314=Sema=FE(14.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
ATAGACACCCTGCAGCCCG
R:
TCTCCAGGTAGTTAAACTCCATCG
Band lengths:
178-298
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains