DreEX6029191 @ danRer10
Exon Skipping
Gene
ENSDARG00000036626 | sema6ba
Description
sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6Ba [Source:ZFIN;Acc:ZDB-GENE-131024-1]
Coordinates
chr2:49540493-49550411:+
Coord C1 exon
chr2:49540493-49540583
Coord A exon
chr2:49543503-49543622
Coord C2 exon
chr2:49550323-49550411
Length
120 bp
Sequences
Splice sites
3' ss Seq
CCTCTGACCTGTGACCCCAGAGG
3' ss Score
5.14
5' ss Seq
GAGGTAATA
5' ss Score
7.96
Exon sequences
Seq C1 exon
AGAGACACTTTGGAATTGGTTGGCGAGCCCATCAGTGGAATGGCCCGATGTCCTTATGATCCCAAACACGCAAACGTCGCTCTGTTCGCAG
Seq A exon
AGGGCAGCTTGTTCACGGGTACAGTGACGGACTTCTTGGCTATTGATGCTGTGATCTACCGCAGTCTGGGAGAGAGTCCTGCCCTGCGCACCATCAAACATGACTCCAAGTGGTTCCGAG
Seq C2 exon
AGCCTTATTTTGTGAGTGCCGTTGAATGGGGACCACATATCTACTTTTTCTTCCGTGAAATGGCCATGGAGTTCAACTACCTGGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000036626-'5-7,'5-6,6-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(7.0=100)
A:
PF0140314=Sema=FE(9.4=100)
C2:
PF0140314=Sema=FE(6.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AGACACTTTGGAATTGGTTGGC
R:
CTTCTCCAGGTAGTTGAACTCCA
Band lengths:
178-298
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]