RnoEX6038628 @ rn6
Exon Skipping
Gene
ENSRNOG00000045998 | Sema6b
Description
semaphorin 6B [Source:RGD Symbol;Acc:69278]
Coordinates
chr9:10943899-10945250:+
Coord C1 exon
chr9:10943899-10943989
Coord A exon
chr9:10944567-10944686
Coord C2 exon
chr9:10945162-10945250
Length
120 bp
Sequences
Splice sites
3' ss Seq
CCTTGTTCCCTGATGTCCAGATG
3' ss Score
5.3
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
ATGGACACACTGCAGCTTCTTGGAGACAACATCAGTGGTATGGCCCGCTGCCCCTACGACCCCAAGCATGCCAATGTCGCCCTCTTCTCAG
Seq A exon
ATGGGATGCTCTTCACAGCCACAGTAACTGACTTCCTAGCCATCGACGCTGTTATCTACCGTAGCCTTGGGGACCGGCCCACACTGCGCACAGTAAAGCATGACTCCAAGTGGTTTAAAG
Seq C2 exon
AGCCATACTTTGTGCATGCGGTGGAGTGGGGAAGCCACGTCTACTTCTTCTTCCGGGAGATCGCCATGGAGTTTAACTATCTGGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000045998-'9-9,'9-8,10-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(7.1=100)
A:
PF0140314=Sema=FE(9.5=100)
C2:
PF0140314=Sema=FE(6.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGACACACTGCAGCTTCTT
R:
TTTCCAGATAGTTAAACTCCATGGCG
Band lengths:
178-298
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]