DreEX6049261 @ danRer10
Exon Skipping
Gene
ENSDARG00000061976 | sema6bb
Description
sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6Bb [Source:ZFIN;Acc:ZDB-GENE-081105-129]
Coordinates
chr8:18975622-18980677:-
Coord C1 exon
chr8:18980587-18980677
Coord A exon
chr8:18978397-18978516
Coord C2 exon
chr8:18975622-18975710
Length
120 bp
Sequences
Splice sites
3' ss Seq
GTTTTTGTGCTTTTTTGCAGAGA
3' ss Score
10.05
5' ss Seq
GAGGTAATG
5' ss Score
8.73
Exon sequences
Seq C1 exon
GGAGACACTCTTGAGATGGTGGGTGAAACTGTAAGTGGCATGGCTCGATGCCCATACGACCCGAAACATGCCAACGTGGCCCTGTTTGCAG
Seq A exon
AGAGGAATCTCTACACGGCCACAGTAACTGATTTTCTGGCTATCGATGCTGTAATCTACAGGAGTCTGGGGGACAATCCTGCCCTGCGAACGGTGAAACACGACTCCAAATGGTTTAGAG
Seq C2 exon
AGCCATACTTTGTGAGCGCTGTGGAATGGGGGCCGCACGTCTACTTCTTTTTCAGAGAGATGGCCATGGAGTTCAACTACCTGGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000061976-'7-15,'7-14,8-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(7.1=100)
A:
PF0140314=Sema=FE(9.5=100)
C2:
PF0140314=Sema=FE(6.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AGACACTCTTGAGATGGTGGGT
R:
CTTCTCCAGGTAGTTGAACTCCA
Band lengths:
178-298
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]