BtaEX6040170 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000047217 | MED16
Description
mediator complex subunit 16 [Source:HGNC Symbol;Acc:HGNC:17556]
Coordinates
chr7:45042319-45043763:-
Coord C1 exon
chr7:45043608-45043763
Coord A exon
chr7:45043157-45043368
Coord C2 exon
chr7:45042319-45042525
Length
212 bp
Sequences
Splice sites
3' ss Seq
TGACCTGCATGTGCCCCCAGGGC
3' ss Score
9.8
5' ss Seq
AGGGTCAGT
5' ss Score
5.85
Exon sequences
Seq C1 exon
TTGGTGACAAACAACCCACAATTCTCAAATGGCGGATTCTGTCAGCCACCAATGACCTGGACCGTGTGTCTGCTGTGGCACTGCCCAAGCTGCCCATCTCACTCACCAACACTGACCTGAAGGTGGCCAGTGACACCCAGTTCTACCCCGGCCTCG
Seq A exon
GGCTGGCCCTGGCCTTCCACGACGGCAGTGTCCACATCGTGCACCGGCTCTCACTGCAGACCATGGCCATCTTCTACAGCTCTGCCGCCCCGCGCCCCATAGACGAGCCAGCTCTCAAGCGCCCCCGGACCACAGGCCCCGCCGTCCACTTCAAGGCCATGCAACTCTCCTGGACCTCCCTGGCCCTCGTGGGCATTGACAACCACGGCAGG
Seq C2 exon
CTGAGCATGTTGCGCATCTCGCCATCCATGGGCCATTCGCTGGACGTGGGGTTGGCCCTGCGGCACCTGCTTTTCCTGCTGGAGTACTGCATGGTGACTGGCTATGACTGGTGGGACATCCTGCTGCACGTGCAGCCCGGCATGGTGCAGAGCCTGGTGGAGAAGCTGCATGAGGAGTACACACGCCAGAAGGCCGAGCTGCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000047217-'16-15,'16-11,17-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.085 C2=0.000
Domain overlap (PFAM):
C1:
PF116353=Med16=FE(7.3=100)
A:
PF116353=Med16=FE(9.8=100)
C2:
PF116353=Med16=FE(9.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTCAGCCACCAATGACCTG
R:
CTCATGCAGCTTCTCCACCAG
Band lengths:
292-504
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]