DreEX0045793 @ danRer10
Exon Skipping
Gene
ENSDARG00000040779 | med16
Description
mediator complex subunit 16 [Source:ZFIN;Acc:ZDB-GENE-090306-4]
Coordinates
chr11:14061733-14070062:+
Coord C1 exon
chr11:14061733-14061888
Coord A exon
chr11:14061976-14062193
Coord C2 exon
chr11:14069856-14070062
Length
218 bp
Sequences
Splice sites
3' ss Seq
TTTTTTGTTGTTGTCCTCAGGTC
3' ss Score
12.85
5' ss Seq
AAGGTATGG
5' ss Score
9.26
Exon sequences
Seq C1 exon
TAGGTGAAAAGCAGCCAATGACTCTAAAGTGGCGAATCCTCTCAACGACCAATGATCTGGACAGAGTGTCTGCTGTCGCTCTGCCTAAACTTCCAATCTCCATCTCAAACACTGATCTCAAAGTTGCCTCTGATACTAAGTTCTTCCCAGGCCTCG
Seq A exon
GTCTTGCCTTGGCATTCCATGATGGCAGTATCCAGATTCTCCATCGCCTTTCCCTCCAAACAGTGGGAATGTTCTATGGTTCCTCTGGTTCCTCCCAGCGCGTTGGAGAAGAACCTGCCATTAAACGCCAGAGAGCCGGAGGCCCAATGCTGCACTTCAAAGCCCTTCAGTTCTCTTGGACATCTTTAGCTCTGGTGGGCATAGACAATCATGGCAAG
Seq C2 exon
TTGCACATGTTTCGAGTGTCCCCATCCATGGGCCAAATGTTGGACATGAACACCCTCCTGCGCCATTTACTGTTTCTCCTGGAGTACTGCATGGTAACAGGATATGACTGGTGGGACGTGCTGCTTCATGCACAGCCTGGCATGGTTCATAACCTTCTGGAGAAGCTTCATGAGGAATACATGAGACAAAACCAAGCACTGCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000040779_MULTIEX1-6/6=5-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.096 C2=0.000
Domain overlap (PFAM):
C1:
PF116353=Med16=FE(7.2=100)
A:
PF116353=Med16=FE(10.0=100)
C2:
PF116353=Med16=FE(9.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGTCGCTCTGCCTAAACTT
R:
CTGCTGCAGTGCTTGGTTTTG
Band lengths:
292-510
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]