MmuEX6049648 @ mm10
Exon Skipping
Gene
ENSMUSG00000013833 | Med16
Description
mediator complex subunit 16 [Source:MGI Symbol;Acc:MGI:2158394]
Coordinates
chr10:79898897-79900252:-
Coord C1 exon
chr10:79900097-79900252
Coord A exon
chr10:79899201-79899409
Coord C2 exon
chr10:79898897-79899103
Length
209 bp
Sequences
Splice sites
3' ss Seq
GACCACGCCCTTACCCGCAGGCT
3' ss Score
8.62
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
TTGGTGACAAACAGCCCATGATCCTCAAGTGGCGAATCCTGTCGGCCACCAATGACCTGGACCGTGTATCCGCGGTGGCACTGCCGAAACTGCCCATCTCACTCACCAACACTGACCTCAAGGTGGCCAGTGACACCCAGTTCTATCCAGGCCTTG
Seq A exon
GCTTAGCGCTGGCCTTCCAGGATGGCAGCGTGCACATGGTGCACCGACTGTCCCTGCAGACCATGGCGGTGTTCTACAGCTCAGCCCCGCGCTCGCTGGATGAGCCGGCCCTAAAGCGCCCACGCACCACATGCCCTGCCGTACACTTTAAAGCCATGCAGCTGTCCTGGACTTCGCTGGCCCTCGTGGGCATCGATAACCATGGGAAG
Seq C2 exon
CTCAGCATGCTGCGAATCTCTCCATCCCTGGGCCACCCACTGGAGCCCAAGCTGGCCCTGCAGCACCTGCTTTTCCTGCTGGAATACTGCATGGTGACCGGCTATGACTGGTGGGACATCCTGCTACACGTGCAGCCCGGCATGGTGCAGAGCCTGGTGGAGCGGCTGCATGAGGAGTACACTCGCCAGAAGCCCGCCCTGCAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000013833-'15-17,'15-13,17-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.057 C2=0.000
Domain overlap (PFAM):
C1:
PF116353=Med16=PD(18.5=90.6)
A:
PF116353=Med16=FE(9.6=100)
C2:
PF116353=Med16=FE(9.5=100)
Main Skipping Isoform:
ENSMUST00000105378fB2422
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCAATGACCTGGACCGTGTA
R:
CGAGTGTACTCCTCATGCAGC
Band lengths:
294-503
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types