GgaEX6027966 @ galGal4
Exon Skipping
Gene
ENSGALG00000001978 | MED16
Description
mediator complex subunit 16 [Source:HGNC Symbol;Acc:HGNC:17556]
Coordinates
chr28:4721658-4722831:-
Coord C1 exon
chr28:4722676-4722831
Coord A exon
chr28:4722129-4722340
Coord C2 exon
chr28:4721658-4721864
Length
212 bp
Sequences
Splice sites
3' ss Seq
TGATTGTCATCTCTCCCCAGGTC
3' ss Score
11.03
5' ss Seq
AAGGTAGCG
5' ss Score
6.91
Exon sequences
Seq C1 exon
TTGGAGACAAGCAGCCCATGATCCTGAAATGGCGAATTCTTTCTGCCACCAATGACTTGGATCGTGTCTCAGCTGTGGCTCTGCCCAAGCTGCCCATCTCCCTCACAAATACTGACCTGAAGGTGGCAAACGACACCAAATTCTTCCCTGGACTGG
Seq A exon
GTCTGGCATTGGCTTTTCATGATGGCAGTGTCCACATTGTTCATCGCCTGTCCCTGCAAATGATGGCTGTCTTCCATGGCTCTTCTTCCCAGCGCCCAGTGGATGAGCAGACTATCAAAAGGCAGCGAACTACTGGTCCCCTGGTTCACTTCAAAGCCATGCAGCTCTCCTGGACGTCTCTGGCCTTGGCTGGCATTGATAGTCATGGGAAG
Seq C2 exon
CTGAGCATGCTTCGTATCTCCCCCTCCATGGGCCATGTGCTGGACATGAACACCTCCCTCCGCCACTTGCTGTTCCTGTTGGAGTACTGCATGGTGACTGGCTACGACTGGTGGGACATCCTGCTCCACGTCCAGCCCAACATGGTCCAAAACCTGGTGGAGAAGCTGCATGAAGAGTACACACGGCAGAGCGCAGCCCTGCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001978-'11-12,'11-10,13-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.085 C2=0.000
Domain overlap (PFAM):
C1:
PF116353=Med16=PD(16.6=79.2)
A:
PF116353=Med16=FE(9.8=100)
C2:
PF116353=Med16=FE(9.5=100)
Main Skipping Isoform:
ENSGALT00000003081fB9340
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCGAATTCTTTCTGCCACCA
R:
GCAGCTTCTCCACCAGGTTTT
Band lengths:
295-507
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]