BtaEX6041232 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000012945 | PDE6A
Description
phosphodiesterase 6A, cGMP-specific, rod, alpha [Source:HGNC Symbol;Acc:HGNC:8785]
Coordinates
chr7:63224217-63232770:-
Coord C1 exon
chr7:63232704-63232770
Coord A exon
chr7:63227275-63227322
Coord C2 exon
chr7:63224217-63224366
Length
48 bp
Sequences
Splice sites
3' ss Seq
TTCCTCTCCATGGCTTTCAGATT
3' ss Score
8.36
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
Exon sequences
Seq C1 exon
GAATCCTCCTCCAGACCACTGGGCTTTAGTGAGCGGTCTCCCCACTTATGTTGCCCAAAATGGCCTG
Seq A exon
ATTTGCAACATCATGAATGCGCCTTCAGAGGACTTTTTTGCATTCCAG
Seq C2 exon
AAAGAGCCTCTGGATGAGTCTGGATGGGTGATTAAAAATGTCCTTTCTATGCCAATTGTGAACAAGAAGGAGGAAATTGTTGGGGTGGCCACGTTTTACAATCGCAAAGATGGAAAACCCTTTGATGAAATGGATGAGACCCTCATGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012945-'7-8,'7-7,8-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.020
Domain overlap (PFAM):
C1:
PF0159021=GAF=FE(12.4=100)
A:
PF0159021=GAF=FE(8.4=100)
C2:
PF0159021=GAF=FE(27.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGTCTCCCCACTTATGTTGC
R:
GCGATTGTAAAACGTGGCCAC
Band lengths:
139-187
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]