RnoEX0064368 @ rn6
Exon Skipping
Gene
ENSRNOG00000017816 | Pde6a
Description
phosphodiesterase 6A [Source:RGD Symbol;Acc:1306835]
Coordinates
chr18:56577344-56581084:+
Coord C1 exon
chr18:56577344-56577410
Coord A exon
chr18:56580548-56580595
Coord C2 exon
chr18:56580935-56581084
Length
48 bp
Sequences
Splice sites
3' ss Seq
ATTCCCCTCCTGGCTTGCAGATC
3' ss Score
10.19
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
GAACCCACCTGCTGACCACTGGGCTCTAGTTAGCGGTCTTCCCACTTATGTGGCTCAAAATGGTCTG
Seq A exon
ATCTGCAATATAATGAATGCGCCTGCAGAGGACTTTTTTGAATTCCAG
Seq C2 exon
AAAGAGCCTCTGGATGAATCTGGATGGATGATTAAAAACGTACTCTCCATGCCGATTGTCAACAAGAAGGAAGAGATCGTGGGCGTGGCCACATTTTACAATCGCAAAGATGGGAAGCCCTTCGACGACATGGACGAGACCCTTATGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000017816-'6-8,'6-7,7-8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.020
Domain overlap (PFAM):
C1:
PF0159021=GAF=FE(12.4=100)
A:
PF0159021=GAF=FE(8.4=100)
C2:
PF0159021=GAF=FE(27.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGGCTCTAGTTAGCGGTCT
R:
CGCCCACGATCTCTTCCTTCT
Band lengths:
134-182
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]