GgaEX6050544 @ galGal4
Exon Skipping
Gene
ENSGALG00000015373 | PDE6B
Description
Phosphodiesterase 6b subunit [Source:UniProtKB/TrEMBL;Acc:F1NA42]
Coordinates
chrZ:53325527-53326125:-
Coord C1 exon
chrZ:53326059-53326125
Coord A exon
chrZ:53325858-53325905
Coord C2 exon
chrZ:53325527-53325676
Length
48 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTTTCAATCCCCTAGATT
3' ss Score
10.26
5' ss Seq
CAGGTAATG
5' ss Score
9.43
Exon sequences
Seq C1 exon
AAATCCTACGCCGGATCACTGGGCACTAGTTACCGGACTGCCAACATACGTGGCTGAGAGTGGGTTT
Seq A exon
ATTTGCAATATTATGAATGCTGCTGCAGACGAGATGTTTAACTTTCAG
Seq C2 exon
GAAGGTCCTCTAGACGAATCAGGATGGACTATCAAAAATGTTCTCTCCATGCCAATAGTCAACAAAAAGGAAGAAATTGTTGGCGTTGTCACATTTTTTAACAGAAAAGATGGGAAACCATTTGATGAACAGGATGAGACCCTGATGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015373-'8-7,'8-6,9-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.020
Domain overlap (PFAM):
C1:
PF0159021=GAF=FE(12.4=100)
A:
PF0159021=GAF=FE(8.4=100)
C2:
PF0159021=GAF=FE(27.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGGCACTAGTTACCGGACT
R:
TGTGACAACGCCAACAATTTCT
Band lengths:
142-190
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]