MmuEX6019418 @ mm10
Exon Skipping
Gene
ENSMUSG00000029491 | Pde6b
Description
phosphodiesterase 6B, cGMP, rod receptor, beta polypeptide [Source:MGI Symbol;Acc:MGI:97525]
Coordinates
chr5:108421217-108423157:+
Coord C1 exon
chr5:108421217-108421283
Coord A exon
chr5:108421488-108421535
Coord C2 exon
chr5:108423008-108423157
Length
48 bp
Sequences
Splice sites
3' ss Seq
CTGTTTCTCTTTCTTTCCAGATC
3' ss Score
13.31
5' ss Seq
CAGGTAATC
5' ss Score
6.99
Exon sequences
Seq C1 exon
CACACCCCCGGCTGATCACTGGGCCCTGGCCAGTGGCCTTCCAACCTACGTAGCAGAAAGTGGCTTT
Seq A exon
ATCTGTAACATCATGAATGCTTCAGCTGATGAAATGTTCAACTTTCAG
Seq C2 exon
GAGGGGCCCCTGGATGATTCAGGATGGGTGATCAAGAATGTCCTCTCTATGCCCATTGTCAACAAGAAAGAGGAGATTGTGGGGGTGGCAACCTTCTACAACAGGAAAGATGGAAAGCCCTTCGATGATCAAGATGAAGTCCTTATGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029491-'17-12,'17-10,18-12
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.020
Domain overlap (PFAM):
C1:
PF0159021=GAF=FE(12.4=100)
A:
PF0159021=GAF=FE(8.4=100)
C2:
PF0159021=GAF=FE(27.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGGCCTTCCAACCTACGTA
R:
GTTGTAGAAGGTTGCCACCCC
Band lengths:
138-186
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types