BtaEX6032571 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000017480 | PDE6B
Description
phosphodiesterase 6B, cGMP-specific, rod, beta [Source:HGNC Symbol;Acc:HGNC:8786]
Coordinates
chr6:108840331-108841453:+
Coord C1 exon
chr6:108840331-108840397
Coord A exon
chr6:108840539-108840586
Coord C2 exon
chr6:108841307-108841453
Length
48 bp
Sequences
Splice sites
3' ss Seq
TGTTTCTGATCCTTTTTCAGATC
3' ss Score
12.02
5' ss Seq
CAGGTATCT
5' ss Score
7.33
Exon sequences
Seq C1 exon
CTCACCCCCGGCTGACCACTGGGCCCTTGCCAGCGGCCTTCCAACCTACGTGGCAGAAAGCGGTTTT
Seq A exon
ATCTGTAATATTATGAATGCCCCTGCCGACGAAATGTTCAATTTTCAG
Seq C2 exon
GAGGGGCCTCTGGACGACTCTGGGTGGATCGTCAAGAACGTCCTCTCCATGCCCATCGTCAACAAGAAGGAGATCGTGGGGGTCGCGACATTTTACAACAGGAAGGACGGGAAGCCCTTCGATGAGCAGGATGAAGTCCTGATGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017480-'8-8,'8-7,9-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.020
Domain overlap (PFAM):
C1:
PF0159021=GAF=FE(12.4=100)
A:
PF0159021=GAF=FE(8.5=100)
C2:
PF0159021=GAF=FE(27.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCAACCTACGTGGCAGAAAG
R:
GCTTCCCGTCCTTCCTGTTG
Band lengths:
143-191
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]