GgaEX6050544 @ galGal3
Exon Skipping
Gene
ENSGALG00000015373 | Q802E5_CHICK
Description
NA
Coordinates
chrZ:52383763-52384361:-
Coord C1 exon
chrZ:52384295-52384361
Coord A exon
chrZ:52384094-52384141
Coord C2 exon
chrZ:52383763-52383912
Length
48 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTTTCAATCCCCTAGATT
3' ss Score
10.26
5' ss Seq
CAGGTAATG
5' ss Score
9.43
Exon sequences
Seq C1 exon
AAATCCTACGCCGGATCACTGGGCACTAGTTACCGGACTGCCAACATACGTGGCTGAGAGTGGGTTT
Seq A exon
ATTTGCAATATTATGAATGCTGCTGCAGACGAGATGTTTAACTTTCAG
Seq C2 exon
GAAGGTCCTCTAGACGAATCAGGATGGACTATCAAAAATGTTCTCTCCATGCCAATAGTCAACAAAAAGGAAGAAATTGTTGGCGTTGTCACATTTTTTAACAGAAAAGATGGGAAACCATTTGATGAACAGGATGAGACCCTGATGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015373-'6-7,'6-6,7-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.020
Domain overlap (PFAM):
C1:
PF0159021=GAF=FE(12.4=100)
A:
PF0159021=GAF=FE(8.4=100)
C2:
PF0159021=GAF=FE(27.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGGCACTAGTTACCGGACT
R:
TGTGACAACGCCAACAATTTCT
Band lengths:
142-190
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]