RnoEX0064385 @ rn6
Exon Skipping
Gene
ENSRNOG00000000065 | Pde6b
Description
phosphodiesterase 6B [Source:RGD Symbol;Acc:1311039]
Coordinates
chr14:2337431-2339270:-
Coord C1 exon
chr14:2339204-2339270
Coord A exon
chr14:2338952-2338999
Coord C2 exon
chr14:2337431-2337580
Length
48 bp
Sequences
Splice sites
3' ss Seq
CTGCTTCTCTTACTTTCCAGATC
3' ss Score
11.75
5' ss Seq
CAGGTAATC
5' ss Score
6.99
Exon sequences
Seq C1 exon
CACACCTCCAGCTGATCACTGGGCCCTGACCAGTGGCCTTCCCACCTATGTGGCAGAAAGTGGCTTT
Seq A exon
ATCTGTAACATCATGAACGCTTCAGCTGATGAAATGTTCAACTTTCAG
Seq C2 exon
GAAGGGCCCCTGGATGAGTCAGGGTGGGTGATCAAGAATGTTCTCTCCATGCCCATTGTCAACAAGAAGGAGGAGATTGTGGGGGTAGCCACCTTCTACAACAGGAAAGATGGAAAGCCCTTCGATGATCAAGATGAAGTCCTTATGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000065-'8-9,'8-8,9-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.020
Domain overlap (PFAM):
C1:
PF0159021=GAF=FE(12.4=100)
A:
PF0159021=GAF=FE(8.4=100)
C2:
PF0159021=GAF=FE(27.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACACCTCCAGCTGATCACTG
R:
TTGTTGACAATGGGCATGGAGA
Band lengths:
132-180
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]