DreEX6084142 @ danRer10
Exon Skipping
Gene
ENSDARG00000011671 | pde6b
Description
phosphodiesterase 6B, cGMP-specific, rod, beta [Source:ZFIN;Acc:ZDB-GENE-090421-2]
Coordinates
chr21:20326445-20326876:+
Coord C1 exon
chr21:20326445-20326511
Coord A exon
chr21:20326615-20326662
Coord C2 exon
chr21:20326727-20326876
Length
48 bp
Sequences
Splice sites
3' ss Seq
TTTTTTATTGTTTGTTGAAGATT
3' ss Score
7.39
5' ss Seq
CAGGTATTG
5' ss Score
8.35
Exon sequences
Seq C1 exon
AAATCCAACTGCAGATCATTGGGCTTTGGCTAGTGGATTACCCACATATGTAGCAGAGAGTGGATTT
Seq A exon
ATTTGCAACATCATGAATGCAGCATCAGAAGAAATGTTCAAGTTTCAG
Seq C2 exon
ACAGAGGCTCTGGATGATAGTGGATGGACCATCAAGAATGTGCTCTCCTTGCCAATTGTCAACAAAAAAGAAGAAATTGTTGGCGTTGCAACTTTCTACAACAGGAAGGATGGCAAACCATTTGATGAACATGATGAGCAACTTATGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000011671-'6-8,'6-7,7-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.020
Domain overlap (PFAM):
C1:
PF0159021=GAF=FE(12.4=100)
A:
PF0159021=GAF=FE(8.5=100)
C2:
PF0159021=GAF=FE(27.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATTGGGCTTTGGCTAGTGGA
R:
AGAAAGTTGCAACGCCAACAA
Band lengths:
148-196
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]