HsaEX6100570 @ hg19
Exon Skipping
Gene
ENSG00000132915 | PDE6A
Description
phosphodiesterase 6A, cGMP-specific, rod, alpha [Source:HGNC Symbol;Acc:8785]
Coordinates
chr5:149278938-149286941:-
Coord C1 exon
chr5:149286875-149286941
Coord A exon
chr5:149283211-149283258
Coord C2 exon
chr5:149278938-149279087
Length
48 bp
Sequences
Splice sites
3' ss Seq
TTCCCCTTCACTGCTCTCAGATT
3' ss Score
8.84
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
Exon sequences
Seq C1 exon
GAATCCACCTCCTGACCATTGGGCTTTAGTAAGCGGTCTCCCAGCTTATGTTGCCCAGAATGGCCTG
Seq A exon
ATTTGCAACATCATGAATGCGCCTGCGGAGGACTTTTTTGCATTTCAG
Seq C2 exon
AAAGAACCTCTGGATGAGTCTGGATGGATGATTAAAAATGTGCTTTCAATGCCGATTGTGAACAAGAAGGAAGAAATTGTTGGAGTGGCCACATTTTACAATCGTAAAGATGGGAAGCCCTTTGATGAAATGGATGAGACGCTCATGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000132915-'6-7,'6-6,7-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.020
Domain overlap (PFAM):
C1:
PF0159021=GAF=FE(12.4=100)
A:
PF0159021=GAF=FE(8.4=100)
C2:
PF0159021=GAF=FE(27.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCCACCTCCTGACCATTGGG
R:
TCCTTCTTGTTCACAATCGGCA
Band lengths:
136-184
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)