DreEX0054319 @ danRer10
Exon Skipping
Gene
ENSDARG00000000380 | pde6a
Description
phosphodiesterase 6A, cGMP-specific, rod, alpha [Source:ZFIN;Acc:ZDB-GENE-030616-42]
Coordinates
chr14:24729384-24730013:-
Coord C1 exon
chr14:24729947-24730013
Coord A exon
chr14:24729676-24729723
Coord C2 exon
chr14:24729384-24729533
Length
48 bp
Sequences
Splice sites
3' ss Seq
CTTTCCATTCACTCCTATAGATC
3' ss Score
9.5
5' ss Seq
CAAGTGAGC
5' ss Score
6.39
Exon sequences
Seq C1 exon
TAACCCTCCTGCTGACCACTGGGCTTTAGTAAGTGGGCTTCCCACCTACGTTGCAGAGAATGGCCTG
Seq A exon
ATCTGTAATATCATGAATGCTGCTCAAGACGAATTCTTCGAATTTCAA
Seq C2 exon
AAAGAACCTCTGGATGAATCTGGATGGATGATAAAGAATGTGCTCTCCTTGCCTATCGTGAACAAGAAAGAGGAAATCGTTGGCGTGGCCACGTTCTATAACAGGAAAGATGGAAAGCCTTTCGATGAAATGGACGAAACGCTAATGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000000380_MULTIEX1-1/3=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.020
Domain overlap (PFAM):
C1:
PF0159021=GAF=FE(12.4=100)
A:
PF0159021=GAF=FE(8.4=100)
C2:
PF0159021=GAF=FE(27.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCTGACCACTGGGCTTTAG
R:
CCACGCCAACGATTTCCTCTT
Band lengths:
147-195
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]