BtaEX6041867 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000044033 | EDIL3
Description
EGF-like repeats and discoidin I-like domains 3 [Source:HGNC Symbol;Acc:HGNC:3173]
Coordinates
chr7:86210884-86302569:-
Coord C1 exon
chr7:86302425-86302569
Coord A exon
chr7:86293916-86294100
Coord C2 exon
chr7:86210884-86211039
Length
185 bp
Sequences
Splice sites
3' ss Seq
CCCTTCTCATTTTCTTCCAGGCT
3' ss Score
10.71
5' ss Seq
CAGGTAATA
5' ss Score
8.55
Exon sequences
Seq C1 exon
GTATTCCATGGAAACGTTGATAACAACACACCCTATGCTAACTCTTTCACACCCCCCATAAAAGCTCAGTATGTGAGACTCTACCCCCAAGTTTGTCGAAGGCATTGCACTTTGAGAATGGAACTTCTTGGATGTGAACTGTCAG
Seq A exon
GCTGTTCTGAGCCTCTGGGGATGAAATCAGGACATATACAAGACTATCAGATCACTGCCTCCAGCATCTTCAGAACTCTCAATATGGACATGTTCACTTGGGAACCAAGGAAAGCCCGGCTGGACAAGCAGGGCAAAGTGAATGCCTGGACCTCCGGCCACAATGACCAATCACAGTGGCTACAG
Seq C2 exon
GTGGATCTTCTAGTCCCTACCAAAGTGACTGGCATTATCACACAAGGAGCTAAAGATTTTGGTCATGTGCAGTTTGTAGGCTCCTACAAACTAGCTTACAGCAATGATGGAGAACACTGGACCGTATACCAGGACGAAAAGCAAAGAAAAGATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000044033-'10-13,'10-11,11-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.020 A=0.081 C2=0.000
Domain overlap (PFAM):
C1:
PF0075420=F5_F8_type_C=PD(29.5=83.7)
A:
PF0075420=F5_F8_type_C=PU(32.1=72.6)
C2:
PF0075420=F5_F8_type_C=FE(36.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTAACTCTTTCACACCCCC
R:
CGTCCTGGTATACGGTCCAGT
Band lengths:
246-431
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]