RnoEX6008160 @ rn6
Exon Skipping
Gene
ENSRNOG00000033064 | Edil3
Description
EGF like repeats and discoidin domains 3 [Source:RGD Symbol;Acc:1588887]
Coordinates
chr2:17984539-18093966:+
Coord C1 exon
chr2:17984539-17984683
Coord A exon
chr2:17989033-17989217
Coord C2 exon
chr2:18093811-18093966
Length
185 bp
Sequences
Splice sites
3' ss Seq
AGTTCTTCTCATTCTGCCAGGCT
3' ss Score
6.57
5' ss Seq
CAGGTAACA
5' ss Score
8.88
Exon sequences
Seq C1 exon
GTCTTCCGTGGCAATGTTGATAACAACACACCCTACGCTAATTCCTTTACACCTCCAATCAAAGCTCAGTACGTAAGACTCTACCCCCAAATTTGTCGAAGGCACTGTACATTAAGAATGGAACTTTTTGGCTGTGAGCTCTCAG
Seq A exon
GCTGTTCAGAACCTTTGGGGATGAAATCCGGACATATACAAGACTACCAGATCACCGCCTCCAGCATCTTCAGAACACTCAACATGGACATGTTCACTTGGGAACCGAGGAAAGCCAGGCTGGACAAGCAGGGCAAAGTGAACGCCTGGACTTCCGGCCATAATGACCAGTCACAATGGTTACAG
Seq C2 exon
GTTGATCTTCTTGTCCCTACCAAAGTGACAGGCATCATTACACAAGGCGCTAAGGATTTTGGTCATGTGCAATTTGTTGGTTCATACAAACTAGCCTACAGCAATGATGGGGAACATTGGACGGTGTACCAAGATGCAAAGCAGAGAAAAGATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000033064-'18-16,'18-12,19-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.020 A=0.081 C2=0.000
Domain overlap (PFAM):
C1:
PF0075420=F5_F8_type_C=PD(29.5=83.7)
A:
PF0075420=F5_F8_type_C=PU(32.1=72.6)
C2:
PF0075420=F5_F8_type_C=FE(36.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCTTCCGTGGCAATGTTGAT
R:
TCCCCATCATTGCTGTAGGCT
Band lengths:
258-443
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]