DreEX0028928 @ danRer10
Exon Skipping
Gene
ENSDARG00000093413 | edil3
Description
EGF-like repeats and discoidin I-like domains 3 [Source:ZFIN;Acc:ZDB-GENE-060503-366]
Coordinates
chr5:46085641-46127542:-
Coord C1 exon
chr5:46127398-46127542
Coord A exon
chr5:46124614-46124798
Coord C2 exon
chr5:46085641-46085796
Length
185 bp
Sequences
Splice sites
3' ss Seq
CACACATTTGAACTGTTCAGGAT
3' ss Score
5.34
5' ss Seq
CAGGTATGA
5' ss Score
9.46
Exon sequences
Seq C1 exon
ATCTTCCGAGGGAATATTGATAACAACACTCCATTTGCGAACTCATTCACCCCTCCAATCGAGGCTCAGTATGTGAGGATCTACCCGCAGGTGTGCAGGAGACACTGTACTCTCCGCATGGAGCTGCTGGGCTGTGAGCTCTCAG
Seq A exon
GATGTTCGGAGCCAATGGGCATGAAGTCTGGCCACATCCAGGACTACCAGATCACAGCCTCCAGCATCTTCCGGACTCTTAACATGGACATGTTCACCTGGGAGCCTGGAAAAGCAAGACTGGATAAACAAGGGAAGGTCAATGCTTGGACGTCTGGACACAGTGACCAGTCCCAGTGGCTACAG
Seq C2 exon
GTTGACATGCTTCGGCCAACAAAAATTACAGGCATTATTACCCAAGGGGCAAAAGACTTTGGACATGTTCAGTTTGTTGGCTCCTATAAGGTGGCTTACAGCAATAATGGTGAAAGATGGCTTATATATCAGGATGAAAAACAGAAGAAAGACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000093413_MULTIEX1-3/4=2-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.020 A=0.065 C2=0.000
Domain overlap (PFAM):
C1:
PF0075420=F5_F8_type_C=PD(30.2=85.7)
A:
PF0075420=F5_F8_type_C=PU(32.1=72.6)
C2:
PF0075420=F5_F8_type_C=FE(37.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAACACTCCATTTGCGAACTCA
R:
GCCATCTTTCACCATTATTGCTGT
Band lengths:
244-429
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]