GgaEX6050884 @ galGal4
Exon Skipping
Gene
ENSGALG00000015630 | EDIL3
Description
EGF-like repeats and discoidin I-like domains 3 [Source:HGNC Symbol;Acc:HGNC:3173]
Coordinates
chrZ:62197445-62240663:+
Coord C1 exon
chrZ:62197445-62197589
Coord A exon
chrZ:62203585-62203769
Coord C2 exon
chrZ:62240508-62240663
Length
185 bp
Sequences
Splice sites
3' ss Seq
ATCTTATTTTGTTGTTCCAGGTT
3' ss Score
9.9
5' ss Seq
CAGGTAAAC
5' ss Score
7.82
Exon sequences
Seq C1 exon
GTGTTCCGTGGAAATGTGGACAACAATACCCCATATGCTAACTCCTTCACTCCTCCAATAAAATCACAGTACATACGCCTGTATCCTCAGGTTTGCCGACGACACTGCACATTGAGAATGGAACTCCTGGGCTGTGAGTTATCAG
Seq A exon
GTTGCTCTGAACCCCTGGGGATGAAATCGGGGCACATACAGGACTATCAAATTACTGCCTCCAGTGTTTTCCGAACGCTCAACATGGATATGTTCGCTTGGGAGCCCAGGAAAGCCCGACTGGACAAGCAAGGCAAAGTTAATGCCTGGACCTCCGGCCACAATGACCAGTCCCAGTGGCTGCAG
Seq C2 exon
GTTGACCTACTTGTCCCTACAAAAGTCACTGGCATAATTACTCAAGGAGCTAAAGATTTTGGTCATGTCCAGTTTGTGGGATCCTACAAGCTTGCCTACAGTAACGATGGGGAGCACTGGATCATATACCAGGATGAAAAACAAAAGAAGGACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015630-'13-18,'13-15,14-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.020 A=0.081 C2=0.000
Domain overlap (PFAM):
C1:
PF0075420=F5_F8_type_C=PD(29.5=83.7)
A:
PF0075420=F5_F8_type_C=PU(32.1=72.6)
C2:
PF0075420=F5_F8_type_C=FE(36.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCGTGGAAATGTGGACAACA
R:
TCCCCATCGTTACTGTAGGCA
Band lengths:
254-439
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]