MmuEX6059537 @ mm9
Exon Skipping
Gene
ENSMUSG00000034488 | Edil3
Description
EGF-like repeats and discoidin I-like domains 3 [Source:MGI Symbol;Acc:MGI:1329025]
Coordinates
chr13:89319841-89429179:+
Coord C1 exon
chr13:89319841-89319985
Coord A exon
chr13:89324284-89324468
Coord C2 exon
chr13:89429024-89429179
Length
185 bp
Sequences
Splice sites
3' ss Seq
AGATCTTCTTATTCTACCAGGCT
3' ss Score
5.89
5' ss Seq
CAGGTAATA
5' ss Score
8.55
Exon sequences
Seq C1 exon
GTCTTTCGTGGAAATGTTGATAACAACACACCATATGCTAATTCTTTCACACCCCCAATCAAAGCTCAGTATGTAAGACTCTACCCCCAAATTTGTCGAAGGCATTGTACTTTAAGAATGGAACTTCTTGGCTGTGAGCTCTCAG
Seq A exon
GCTGTTCAGAACCTTTGGGGATGAAATCAGGGCATATACAAGACTACCAGATCACTGCCTCCAGCGTCTTCAGAACACTCAACATGGACATGTTTACTTGGGAACCAAGGAAAGCCAGGCTGGACAAGCAAGGCAAAGTAAATGCCTGGACTTCCGGCCATAACGACCAGTCACAATGGTTACAG
Seq C2 exon
GTTGATCTTCTTGTCCCTACTAAGGTGACAGGCATCATTACACAAGGAGCTAAAGATTTTGGTCACGTGCAGTTTGTTGGGTCATACAAACTAGCTTACAGCAATGATGGAGAACACTGGATGGTGCACCAGGATGAAAAACAGAGAAAAGACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000034488-'12-11,'12-8,13-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.020 A=0.081 C2=0.038
Domain overlap (PFAM):
C1:
PF0075420=F5_F8_type_C=PD(29.5=83.7)
A:
PF0075420=F5_F8_type_C=PU(32.1=72.6)
C2:
PF0075420=F5_F8_type_C=FE(36.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCACACCCCCAATCAAAGCTC
R:
TGTTTTTCATCCTGGTGCACCA
Band lengths:
242-427
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: