MmuEX6059537 @ mm10
Exon Skipping
Gene
ENSMUSG00000034488 | Edil3
Description
EGF-like repeats and discoidin I-like domains 3 [Source:MGI Symbol;Acc:MGI:1329025]
Coordinates
chr13:89180236-89289574:+
Coord C1 exon
chr13:89180236-89180380
Coord A exon
chr13:89184679-89184863
Coord C2 exon
chr13:89289419-89289574
Length
185 bp
Sequences
Splice sites
3' ss Seq
AGATCTTCTTATTCTACCAGGCT
3' ss Score
5.89
5' ss Seq
CAGGTAATA
5' ss Score
8.55
Exon sequences
Seq C1 exon
GTCTTTCGTGGAAATGTTGATAACAACACACCATATGCTAATTCTTTCACACCCCCAATCAAAGCTCAGTATGTAAGACTCTACCCCCAAATTTGTCGAAGGCATTGTACTTTAAGAATGGAACTTCTTGGCTGTGAGCTCTCAG
Seq A exon
GCTGTTCAGAACCTTTGGGGATGAAATCAGGGCATATACAAGACTACCAGATCACTGCCTCCAGCGTCTTCAGAACACTCAACATGGACATGTTTACTTGGGAACCAAGGAAAGCCAGGCTGGACAAGCAAGGCAAAGTAAATGCCTGGACTTCCGGCCATAACGACCAGTCACAATGGTTACAG
Seq C2 exon
GTTGATCTTCTTGTCCCTACTAAGGTGACAGGCATCATTACACAAGGAGCTAAAGATTTTGGTCACGTGCAGTTTGTTGGGTCATACAAACTAGCTTACAGCAATGATGGAGAACACTGGATGGTGCACCAGGATGAAAAACAGAGAAAAGACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000034488-'25-25,'25-19,30-25=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.020 A=0.081 C2=0.038
Domain overlap (PFAM):
C1:
PF0075420=F5_F8_type_C=PD(29.5=83.7)
A:
PF0075420=F5_F8_type_C=PU(32.1=72.6)
C2:
PF0075420=F5_F8_type_C=FE(36.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCACACCCCCAATCAAAGCTC
R:
TGTTTTTCATCCTGGTGCACCA
Band lengths:
242-427
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types