BtaEX6043064 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004884 | SLC4A5
Description
solute carrier family 4 (sodium bicarbonate cotransporter), member 5 [Source:HGNC Symbol;Acc:HGNC:18168]
Coordinates
chr11:10376398-10382020:+
Coord C1 exon
chr11:10376398-10376531
Coord A exon
chr11:10377321-10377592
Coord C2 exon
chr11:10381962-10382020
Length
272 bp
Sequences
Splice sites
3' ss Seq
TGCTTCCCTCTGCCTTCCAGAGG
3' ss Score
8.6
5' ss Seq
CAGGTGACC
5' ss Score
6.54
Exon sequences
Seq C1 exon
GGAGTGATGGAGAGTTTCCTGGGCACTGCCATGGCTGGCTCCTTGTTCTGCCTCTTCTCGGGACAGCCTCTCATCATACTCAGCAGCACGGGACCCATCCTCATCTTTGAGAAGCTCCTCTTCGACTTCAGCAA
Seq A exon
AGGCAATGGCCTGGACTACATGGAGTTCCGCCTCTGGATTGGCCTGCACTCGGCCGTCCAGTGCCTTATCCTGGTGGCCACAGATGCCAGCTTTGTCATCAAGTATATCACCCGCTTCACTGAGGAGGGTTTCTCCACCCTCATCAGCTTCATCTTCATCTATGATGCCATCAAGAAGATGATTGGTACCTTCAAGTACTACCCCATCAACATGAACTTTAAGCCTGACTCCATCACCACCTACAAATGCGAATGCGTCGCCCCTGACACAG
Seq C2 exon
CGAATACAACCCTGTTCAATGCTTCAGCCACGCTGCCACCAAATACCAACACTTCTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004884-'20-15,'20-14,21-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=FE(8.2=100)
A:
PF0095516=HCO3_cotransp=FE(16.9=100)
C2:
PF0095516=HCO3_cotransp=FE(3.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGATGGAGAGTTTCCTGGGC
R:
GAGAAGTGTTGGTATTTGGTGGC
Band lengths:
188-460
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]