GgaEX7011581 @ galGal4
Exon Skipping
Gene
ENSGALG00000013515 | SLC4A5
Description
solute carrier family 4 (sodium bicarbonate cotransporter), member 5 [Source:HGNC Symbol;Acc:HGNC:18168]
Coordinates
chr22:2845280-2848527:-
Coord C1 exon
chr22:2848394-2848527
Coord A exon
chr22:2848010-2848281
Coord C2 exon
chr22:2845280-2845341
Length
272 bp
Sequences
Splice sites
3' ss Seq
CATTTTCTGCCTGCTTTCAGAGG
3' ss Score
9.52
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
GGTGTCATGGAGAGCTTCCTTGGCACAGCAATGGCAGGTTCCATGTTTTGCCTCTTTGCTGGGCAGCCGCTCATCATCCTCAGCAGCACCGGCCCCATCCTCATCTTTGAGAAGCTGCTCTTTGACTTCAGCAA
Seq A exon
AGGTAACGGCATCGACTACATGGAGTTCCGCCTCTGGATTGGCTTGCACTCTGCTCTACAGTGCCTTATCCTGGTGGCTACTGACGCCAGCTTCATTATAAAGTACATCACCCGCTTCACAGAGGAAGGCTTCTCCACCCTCATCAGCTTCATCTTCATCTACGATGCCATCAAGAAGATGATAGGGGCCTTTAAGTACTACCCCATCAATTCGGACTTCAAGCCAGACTATGTGACCATGTACAAATGCGAGTGCATTGCTCCTGACCCAG
Seq C2 exon
CCAACATGACATTGTTCGATGCTTCAGTTCCAGTAGCACCAAACACCACTAACGCGTCTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013515-'20-21,'20-19,22-21=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=FE(13.5=100)
A:
PF0095516=HCO3_cotransp=FE(20.3=100)
C2:
PF0095516=HCO3_cotransp=FE(4.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGTCATGGAGAGCTTCCTT
R:
CAGAGACGCGTTAGTGGTGTT
Band lengths:
196-468
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]