RnoEX6014029 @ rn6
Exon Skipping
Gene
ENSRNOG00000010378 | Slc4a5
Description
solute carrier family 4 member 5 [Source:RGD Symbol;Acc:1303009]
Coordinates
chr4:114968268-114973940:+
Coord C1 exon
chr4:114968268-114968401
Coord A exon
chr4:114969475-114969746
Coord C2 exon
chr4:114973882-114973940
Length
272 bp
Sequences
Splice sites
3' ss Seq
CACTTCCCTCTGCCATCCAGGGC
3' ss Score
6.88
5' ss Seq
CAGGTAGTC
5' ss Score
5.3
Exon sequences
Seq C1 exon
GGAGTAATGGAGAGCTTCCTGGGCACTGCCATGGCTGGCAGCTTGTTCTGCCTCTTCTCGGGGCAGCCTCTCATCATCCTCAGCAGCACAGGACCCATCCTCATCTTTGAAAAGCTCCTCTTTGACTTCAGCAA
Seq A exon
GGCCAATGGCCTGGACTACATGGAGTTCCGCCTCTGGATTGGTCTTCACTCAGCCATCCAATGCCTTATCCTGGTGGCCACAGATGCCAGCTTTATCATCAAGTATATCACCCGCTTCACCGAAGAGGGCTTCTCCACCCTCATCAGTTTCATCTTCATCTACGACGCCATCAAAAAGATGATTGGTGCCTTCAAATACTATCCCATTAACACGGACTTCAAGCCCGACTCCATCACCACCTACAAATGCGAGTGCGTCGCTCCTGACACAG
Seq C2 exon
TGAATACAACCACTGTCAACGACTCAGCCCTGCTGGTGCCAAACACCAACATGTCTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010378-'16-25,'16-21,17-25=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=FE(14.4=100)
A:
PF0095516=HCO3_cotransp=FE(17.5=100)
C2:
PF0095516=HCO3_cotransp=FE(3.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAATGGAGAGCTTCCTGGGCA
R:
CACAGACATGTTGGTGTTTGGC
Band lengths:
189-461
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]