DreEX6011063 @ danRer10
Exon Skipping
Gene
ENSDARG00000002771 | SLC4A5 (1 of 2)
Description
solute carrier family 4 (sodium bicarbonate cotransporter), member 5 [Source:HGNC Symbol;Acc:HGNC:18168]
Coordinates
chr5:27470921-27474048:-
Coord C1 exon
chr5:27473915-27474048
Coord A exon
chr5:27473428-27473699
Coord C2 exon
chr5:27470921-27470982
Length
272 bp
Sequences
Splice sites
3' ss Seq
TGAAACTTTTTTGTCCTCAGAAA
3' ss Score
9.44
5' ss Seq
CGAGTAAGT
5' ss Score
10.15
Exon sequences
Seq C1 exon
GGTGTAATGGAGAGTTTTTTGGGCACCGCTTTAGCAGGAACAGTATTCTGCGTTTTTGGCGGTCAACCCCTCATTATTCTCAGCTCAACAGGGCCCATCCTCATCTTCGAGAAACTGCTTTATGAATTCAGCAA
Seq A exon
AAATAATGCGATTGATTACATGGAGCTCCGGCTGTGGATCGGCATTCACTCCTGCATTCAGTGCTTTATCCTGGTGGCCACGGATGCCAGTTACATCATAAAGTACATGACGCGCTTTACGGAGGAGGGCTTCTCTAGTCTCATCTCCTTCATCTTCATCTCTGACGCCATCAAGAAGATGGTGGGCTCCTTTAAATATTACCCCATCAACACTGACTTCAAGCCGGACTACGTTACGGCCTACAAGTGCGAGTGTGTGGCACCAGACCCGA
Seq C2 exon
TGGCAACAATGATCTTCGATGTTGTAGTCCCAGTGCCAGATAATACCTCTGCTCTCTTTGGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000002771-'15-18,'15-17,16-18=AN
Average complexity
A_C2
Mappability confidence:
88%=100=75%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=FE(21.4=100)
A:
PF0095516=HCO3_cotransp=FE(17.5=100)
C2:
PF0095516=HCO3_cotransp=PD(4.3=75.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCGCTTTAGCAGGAACAGT
R:
CCAAAGAGAGCAGAGGTATTATCTGG
Band lengths:
172-444
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]